https://jinxinmonash.r-universe.devRecent package updates in jinxinmonashR-universehttps://github.com/jinxinmonash.pnghttps://jinxinmonash.r-universe.devSun, 11 Oct 2026 19:52:50 GMTjinxin.zhao@monash.edu (Jinxin Zhao)scProkaR provides a SingleCellExperiment-centred workflow for microbial single-cell RNA sequencing data. It standardises bacterial input objects from count matrices, 10x Genomics directories or Seurat objects, and computes prokaryote-specific quality-control metrics such as ribosomal RNA fraction. It performs batch integration with several backends and scores the resulting embeddings with scIB-inspired benchmarking metrics. It also supports pseudobulk differential expression with edgeR and Time Aware Trajectory Analysis (TATA), a time-informed trajectory abstraction for perturbation time courses.https://github.com/r-universe/biocstaging/actions/runs/38172208718Sun, 11 Oct 2026 19:52:50 GMTscProkaR0.99.2successhttps://biocstaging.r-universe.devhttps://github.com/BiocStaging/scProkaRscprokar-workflow.Rmdscprokar-workflow.htmlscProkaR core workflow for microbial single-cell RNA-seq2026-03-23 11:11:562026-10-11 19:52:50tata-workflow.Rmdtata-workflow.htmlTime Aware Trajectory Analysis (TATA) with scProkaR2026-03-23 11:11:562026-10-11 19:52:50